PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g05880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 203aa    MW: 22701.9 Da    PI: 9.2529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g05880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-18130172247
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                     +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka++
  Vang11g05880.1 130 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYD 172
                     8********.**********96655..******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-24129174IPR001471AP2/ERF domain
CDDcd000182.99E-23129173No hitNo description
PROSITE profilePS5103218.637130172IPR001471AP2/ERF domain
PfamPF008475.3E-12130173IPR001471AP2/ERF domain
SMARTSM003801.5E-21130188IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-16130175IPR016177DNA-binding domain
PRINTSPR003679.8E-11131142IPR001471AP2/ERF domain
PRINTSPR003679.8E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MANAAEVSAL NRIKLHLLGE LSPLATPQNN QTNQSPSQSS SSDSCLSFDH CFTELLDPEI  60
QLPLFEFHSK PQIIDLDTPK PLTSLHKKPQ LNRKPSLQIS LPKQTEWIQF GKQDPNPAVL  120
LPENQPEKKH YRGVRQRPWG KFAAEIRDPN KRGSRVWLGT FDTAIEAAKA YDRDFQRSAV  180
VAVISSSGFW IFTTNGCVKL VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22129173145ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507066.13e-99PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803411e-44EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0L9TQV81e-125A0A0L9TQV8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R5G21e-125A0A0S3R5G2_PHAAN; Uncharacterized protein
STRINGGLYMA05G05130.16e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-44ethylene responsive element binding factor 5